Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1989469_1995604_R

Intron Information:

Intron Rank:

148632

Intron Class:

major

Intron Phase:

Intron Coordinates:

1989469 - 1995604

Intron Length:

6136

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGGGTGAG

5'SS Class:

major

3'SS Sequence:

CTTTCTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACCTAT

U12 Branch Point Sequence:

TTTTCTGTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.1

59.7

41.3

Major BPS

0.27

1.3

58.7

39.9

Major PPT

84.4

0.77

0.8

76.5

37.6

Minor 5ss

25.7

-2.8

3.2

30.8

43.2

Minor BPS

60.1

0.4

2.3

87.23

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027418

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045648

1988470 - 2010759

22290

ENSAPLT00000022525

1986805 - 1995734

8930