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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_199099_199180_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199099 - 199180
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TCTCTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTCTCCTGATGT
Flanking Amino Acid:
ISFLGALRIPGVVEFSLCLL
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
59.2
39.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.9
0.7
0.7
72.9
31.9
Minor 5ss
33
-1.9
3
47
41.2
Minor BPS
48.6
-0
2.1
68.24
48.3

Associated Gene:

Gene:
SLC37A2
Ensembl Gene ID:
ENSAPLG00000011879
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024265
195217 - 202194
6978
ENSAPLT00000012386
195217 - 202791
7575
ENSAPLT00000007838
195217 - 203244
8028
ENSAPLT00000042855
195217 - 202791
7575