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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1995735_2010680_R

Intron Information:

Intron Rank:
148638
Intron Class:
major
Intron Phase:
Intron Coordinates:
1995735 - 2010680
Intron Length:
14946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CAGCCCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
68.9
0.43
1.1
71.5
37.6
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
62.8
0.48
1.3
69.17
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027418
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045648
1988470 - 2010759
22290