About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2010760_2010907_R

Intron Information:

Intron Rank:
148634
Intron Class:
major
Intron Phase:
Intron Coordinates:
2010760 - 2010907
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
GATTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGTCTATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
68.8
37.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83
0.74
0.8
76.8
37.1
Minor 5ss
32.2
-2
2.7
39.2
40.4
Minor BPS
57
0.3
1.6
73.69
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027418
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032953
2004917 - 2011098
6182