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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_201598_201712_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201598 - 201712
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCCGTGTG
5'SS Class:
major
3'SS Sequence:
TGTCCCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TAGCCCCTAATG
Flanking Amino Acid:
TAIIDGTGSVGAALGPLLAG
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.4
58.2
46.8
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
67.4
0.39
1
62.5
34.6
Minor 5ss
30.2
-2.3
3.3
32
42.4
Minor BPS
54
-0
1.8
59.07
42.5

Associated Gene:

Gene:
SLC37A2
Ensembl Gene ID:
ENSAPLG00000011879
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024265
195217 - 202194
6978
ENSAPLT00000012386
195217 - 202791
7575
ENSAPLT00000007838
195217 - 203244
8028
ENSAPLT00000042855
195217 - 202791
7575