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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_201811_201936_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201811 - 201936
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTCCT
5'SS Class:
major
3'SS Sequence:
TTTCCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGCAT
U12 Branch Point Sequence:
CTGCCAGTGATG
Flanking Amino Acid:
LIAADVLACLLLARVVVKEV
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68
42.9
Major BPS
58.4
0.21
1.3
69.4
37.7
Major PPT
89.6
0.89
0.6
84.7
22.9
Minor 5ss
35.6
-1.6
3.2
47.6
42.2
Minor BPS
40.6
-0.8
2.2
44.5
42.1

Associated Gene:

Gene:
SLC37A2
Ensembl Gene ID:
ENSAPLG00000011879
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042855
195217 - 202791
7575
ENSAPLT00000024265
195217 - 202194
6978
ENSAPLT00000012386
195217 - 202791
7575
ENSAPLT00000007838
195217 - 203244
8028