About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2074823_2078244_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2074823 - 2078244
Intron Length:
3422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTCAGCCAA
5'SS Class:
major
3'SS Sequence:
CCGAAACCCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CGCTCCGAAACC
Flanking Amino Acid:
PFSKQKGKEKKRGEVSLRVR
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
58.8
42.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
56.1
0.14
0.9
47.1
35.2
Minor 5ss
34.3
-1.8
3
39.6
40
Minor BPS
46.7
-0.2
2.3
58.41
46.7

Associated Gene:

Gene:
ADAMTS8
Ensembl Gene ID:
ENSAPLG00000006051
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006314
2074669 - 2084592
9924