About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2078614_2080556_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2078614 - 2080556
Intron Length:
1943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
TTGCCCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AGGAAAATAACC
Flanking Amino Acid:
RKISGSLNRSKYGYNDIVTI
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.6
39.9
Major BPS
61.3
0.28
1
62
30.6
Major PPT
68.1
0.41
0.9
62.5
33.5
Minor 5ss
37
-1.5
3.5
51.2
39.7
Minor BPS
42.1
-0.6
1.9
50.3
38.9

Associated Gene:

Gene:
ADAMTS8
Ensembl Gene ID:
ENSAPLG00000006051
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006314
2074669 - 2084592
9924