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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2081016_2081216_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2081016 - 2081216
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCCAC
5'SS Class:
major
3'SS Sequence:
CCTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTCAC
U12 Branch Point Sequence:
TTTGGGGTCACG
Flanking Amino Acid:
SCHTDECPQDGKSFREQQCE
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
63.6
42.9
Major BPS
46.8
-0.2
1.4
48.8
46.3
Major PPT
81.7
0.71
0.7
72.7
32.1
Minor 5ss
38.6
-1.3
3.1
51.7
45
Minor BPS
33.9
-1.4
3
50
50

Associated Gene:

Gene:
ADAMTS8
Ensembl Gene ID:
ENSAPLG00000006051
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006314
2074669 - 2084592
9924