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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2082529_2082950_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2082529 - 2082950
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATGCAC
5'SS Class:
major
3'SS Sequence:
TCCTGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
AGGCAGGTAACT
Flanking Amino Acid:
QAAYTLAHELGHVLSMPHDD
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
56.8
42.4
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
73.7
0.53
0.8
65
36.4
Minor 5ss
30.7
-2.2
3.2
33.6
41.9
Minor BPS
39.4
-0.7
2.5
57.61
44.6

Associated Gene:

Gene:
ADAMTS8
Ensembl Gene ID:
ENSAPLG00000006051
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006314
2074669 - 2084592
9924