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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_208278_208447_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
208278 - 208447
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTGTTCTCAATT
Flanking Amino Acid:
VYAKPLRRSWSLNGETRKVK
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
79.8
0.67
0.8
76.2
32.4
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
64.1
0.52
1.5
76.5
40.5

Associated Gene:

Gene:
TMEM218
Ensembl Gene ID:
ENSAPLG00000031233
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048136
207067 - 209775
2709