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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_209588_209665_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
209588 - 209665
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
GGCCGCTGAGGC
Flanking Amino Acid:
LALARAPGAARLAALPVPLG
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
35.8
-1.1
2
38.25
39.5

Associated Gene:

Gene:
TMEM218
Ensembl Gene ID:
ENSAPLG00000031233
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048136
207067 - 209775
2709