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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2109298_2110061_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2109298 - 2110061
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
TTCCATCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GGTTCCTCACGT
Flanking Amino Acid:
PSAFTTAHELGHVFNMPHDN
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
63.9
42.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
77.3
0.61
0.8
69
36.7
Minor 5ss
30.6
-2.2
3.3
33.6
41.9
Minor BPS
48.6
-0
2.1
69.89
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006340
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006594
2105969 - 2114329
8361