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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2110909_2111248_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2110909 - 2111248
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CATGTCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CATGTCCCACCA
Flanking Amino Acid:
VERHNISKYRVDGGWAKWAP
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
65
0.34
1
56.2
39.7
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
39.7
-0.7
2
48.65
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006340
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006594
2105969 - 2114329
8361