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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2112237_2112950_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2112237 - 2112950
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGAG
5'SS Class:
major
3'SS Sequence:
CTCACCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CTTGTCTCACCT
Flanking Amino Acid:
TGYFYVLAPKVVDGTPCSPD
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
64.4
41.8
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
71.2
0.48
0.8
64.3
31
Minor 5ss
27
-2.6
3.1
31.3
43
Minor BPS
49.3
0.03
2
71.07
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006340
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006594
2105969 - 2114329
8361