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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2113127_2113548_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2113127 - 2113548
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
TCAGCCTGATGC
Flanking Amino Acid:
KKVSGLFTKPMHGYNFVVVI
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
81.7
0.71
0.7
72.9
32
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
43.6
-0.5
2
51.61
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006340
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006594
2105969 - 2114329
8361