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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2135795_2137030_R

Intron Information:

Intron Rank:
147327
Intron Class:
major
Intron Phase:
Intron Coordinates:
2135795 - 2137030
Intron Length:
1236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCGAA
U12 Branch Point Sequence:
TTCCTCCGAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
85.7
25.6
Major BPS
48.8
-0
1.2
47.8
37.7
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
46.8
-0.3
2.7
66.4
45.1
Minor BPS
42.6
-0.7
2
49.92
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026595
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042383
2134069 - 2138019
3951