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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_217568_218725_F

Intron Information:

Intron Rank:
135554
Intron Class:
major
Intron Phase:
Intron Coordinates:
217568 - 218725
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
TTTGCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTGCCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
85.7
0.8
0.8
77.2
37
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022938
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031662
217207 - 224010
6804
ENSAPLT00000032907
217207 - 267076
49870