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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_218869_266409_F

Intron Information:

Intron Rank:
135557
Intron Class:
major
Intron Phase:
Intron Coordinates:
218869 - 266409
Intron Length:
47541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
84.1
0.77
0.8
76.8
37.2
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
49.3
0.03
2.1
75.69
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022938
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032907
217207 - 267076
49870