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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2241812_2242498_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2241812 - 2242498
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTCTCCATTT
Flanking Amino Acid:
LESLGHPVINRHLVFCLLDI
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
80.5
0.69
0.8
77.4
29.7
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
46
-0.2
2
68.41
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025270
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034720
2241676 - 2244209
2534