About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2242587_2243364_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2242587 - 2243364
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGATGTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TGTTCCTAAAGC
Flanking Amino Acid:
ALQSLMGILPDVIQEILGTS
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
68.8
42.2
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
65.5
0.35
1.1
60.3
44.8
Minor 5ss
32.2
-2
3.1
37.3
42.5
Minor BPS
62.3
0.37
2
75.04
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025270
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034720
2241676 - 2244209
2534