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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2252678_2330648_F

Intron Information:

Intron Rank:
150609
Intron Class:
major
Intron Phase:
Intron Coordinates:
2252678 - 2330648
Intron Length:
77971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TGGCTCTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
69.8
0.49
1
61
37.5
Major PPT
85.4
0.8
0.7
84.2
23.8
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
50.2
0
1.6
59.85
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030920
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041430
2251962 - 2330957
78996