Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2332389_2333455_F

Intron Information:

Intron Rank:

138503

Intron Class:

major

Intron Phase:

Intron Coordinates:

2332389 - 2333455

Intron Length:

1067

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGCAGC

5'SS Class:

major

3'SS Sequence:

TCTGTTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACATCAA

U12 Branch Point Sequence:

GCGACATCAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.1

60.8

44.4

Major BPS

57.7

0.19

1.1

Major PPT

83.9

0.76

0.8

81.3

30.8

Minor 5ss

-1

2.8

48.7

41.5

Minor BPS

43.6

-0.6

1.8

42.4

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024595

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048274

2331837 - 2344737

12901

ENSAPLT00000027041

2331837 - 2349107

17271