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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2333588_2341527_F

Intron Information:

Intron Rank:
138504
Intron Class:
major
Intron Phase:
Intron Coordinates:
2333588 - 2341527
Intron Length:
7940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
CTCATGTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
74.1
38.4
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
81.2
0.7
0.8
75.8
32.7
Minor 5ss
31
-2.2
3.2
40.2
45.9
Minor BPS
45
-0.3
2.1
56
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024595
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027041
2331837 - 2349107
17271
ENSAPLT00000048274
2331837 - 2344737
12901
ENSAPLT00000045925
2304814 - 2342974
38161