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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_23359_35698_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23359 - 35698
Intron Length:
12340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGCACATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TAATTTTTCACA
Flanking Amino Acid:
SLAIASGNDLAVVELLKHGA
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.4
0.42
0.9
60.9
39.2
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
58
0.25
1.7
68.62
37.8

Associated Gene:

Gene:
ANKMY1
Ensembl Gene ID:
ENSAPLG00000013399
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013963
6941 - 53344
46404