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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2341605_2349063_F

Intron Information:

Intron Rank:
138505
Intron Class:
major
Intron Phase:
Intron Coordinates:
2341605 - 2349063
Intron Length:
7459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
GATTTGTAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
69.8
0.45
0.9
65.6
30.3
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
48.2
-0.1
2.3
63.62
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024595
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027041
2331837 - 2349107
17271