Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2666288_2669139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2666288 - 2669139

Intron Length:

2852

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCGGG

5'SS Class:

major

3'SS Sequence:

CTTTGATTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TGTGCCTTAACC

Flanking Amino Acid:

GNTNASMILYEETTTALTPW

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

54.4

44.7

Major BPS

0.85

0.9

39.9

Major PPT

80.1

0.68

0.8

77.8

35.6

Minor 5ss

30.8

-2.2

3.3

38.2

46.7

Minor BPS

80.3

0.93

1.3

83.37

36.3

Associated Gene:

Gene:

NTM

Ensembl Gene ID:

ENSAPLG00000003740

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003889

2349110 - 2670660

321551