Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2669173_2670559_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2669173 - 2670559

Intron Length:

1387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CGCCCTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTAACAC

U12 Branch Point Sequence:

CGGTGGCTAACA

Flanking Amino Acid:

ETTTALTPWKGPGAVHDGNN

Intron Amino Acid Position:

308

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

1.2

81.4

32.7

Major BPS

49.5

-0

1.1

58.7

36.3

Major PPT

72.2

0.5

0.8

65.1

30.6

Minor 5ss

31.4

-2.1

2.5

36.7

40.4

Minor BPS

40.5

-0.7

2.5

52.23

45.6

Associated Gene:

Gene:

NTM

Ensembl Gene ID:

ENSAPLG00000003740

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003889

2349110 - 2670660

321551