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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2677176_2677412_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2677176 - 2677412
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGTGCT
5'SS Class:
major
3'SS Sequence:
CTCTCCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAC
U12 Branch Point Sequence:
CTCTCCCCCACA
Flanking Amino Acid:
GNTNASIILYGPGAVHDGGN
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
66.4
39.3
Major BPS
64.7
0.37
1.1
67.2
35.2
Major PPT
75
0.56
0.7
68.5
25.3
Minor 5ss
29.3
-2.4
3.4
41.6
44.9
Minor BPS
45.2
-0.3
2.3
59.96
45.8

Associated Gene:

Gene:
OPCML
Ensembl Gene ID:
ENSAPLG00000004450
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034189
2676560 - 2964161
287602
ENSAPLT00000004587
2676560 - 2693903
17344
ENSAPLT00000042010
2676560 - 2916924
240365
ENSAPLT00000034726
2676560 - 2707475
30916