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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2678616_2693482_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2678616 - 2693482
Intron Length:
14867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
GTGTGCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTGAT
U12 Branch Point Sequence:
TGTGCGTTGATG
Flanking Amino Acid:
KTSRVHLIVQVPPQIVNISS
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
77.8
38.7
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
73.7
0.53
1
66
40.8
Minor 5ss
30.5
-2.2
2.9
41.4
45
Minor BPS
48.3
-0.2
2.2
58.73
43.7

Associated Gene:

Gene:
OPCML
Ensembl Gene ID:
ENSAPLG00000004450
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033259
2676560 - 2772372
95813
ENSAPLT00000042010
2676560 - 2916924
240365
ENSAPLT00000004587
2676560 - 2693903
17344
ENSAPLT00000034726
2676560 - 2707475
30916
ENSAPLT00000034189
2676560 - 2964161
287602
ENSAPLT00000034099
2676560 - 2693903
17344