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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2772291_2916829_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2772291 - 2916829
Intron Length:
144539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
TCTGTCTCAGGC
Flanking Amino Acid:
TFLVEESLSGGVPVRSGDAT
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
72.3
0.5
0.9
65.6
36.1
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
43.1
-0.5
2
53.43
44.7

Associated Gene:

Gene:
OPCML
Ensembl Gene ID:
ENSAPLG00000004450
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042010
2676560 - 2916924
240365