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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2772291_2964085_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2772291 - 2964085
Intron Length:
191795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
TCTGTCTCAGGC
Flanking Amino Acid:
KAPISELKPGGVPVRSGDAT
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
73.5
30.3
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
72.3
0.5
0.9
65.6
36.1
Minor 5ss
26.9
-2.7
3
32.5
42.3
Minor BPS
43.1
-0.5
2
53.43
44.7

Associated Gene:

Gene:
OPCML
Ensembl Gene ID:
ENSAPLG00000004450
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034189
2676560 - 2964161
287602