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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_281998_286248_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
281998 - 286248
Intron Length:
4251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCAA
5'SS Class:
major
3'SS Sequence:
CTGTCCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTTAT
U12 Branch Point Sequence:
CTGTCCTTCACA
Flanking Amino Acid:
QLEADKRAVYRHPLFPLLTL
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
63.8
37.7
Major BPS
60
0.25
1.2
51.4
43.9
Major PPT
77.7
0.62
0.8
71.8
32.7
Minor 5ss
24.7
-2.9
3
29.4
43.3
Minor BPS
68
0.56
1.8
74.81
43.1

Associated Gene:

Gene:
PKNOX2
Ensembl Gene ID:
ENSAPLG00000013813
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014416
281705 - 304546
22842