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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_286421_290180_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
286421 - 290180
Intron Length:
3760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGAGTGG
5'SS Class:
major
3'SS Sequence:
TGCCCGTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GATGCTTTAAAC
Flanking Amino Acid:
FSDDPELDNLMVKAIQVLRI
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.1
47.3
43.6
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
62.5
0.28
1
55.8
38.9
Minor 5ss
34.2
-1.8
3.6
43.1
46.4
Minor BPS
60.6
0.31
1.5
65.59
39.7

Associated Gene:

Gene:
PKNOX2
Ensembl Gene ID:
ENSAPLG00000013813
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014416
281705 - 304546
22842