Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_290370_296649_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

290370 - 296649

Intron Length:

6280

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGCCT

5'SS Class:

major

3'SS Sequence:

CCTCTTTTCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTGCAT

U12 Branch Point Sequence:

GCATGTGCAACT

Flanking Amino Acid:

NPSSISLHPQEMLQSSPAAL

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.2

44.2

Major BPS

53.6

0.09

1.4

65.3

41.5

Major PPT

83.5

0.75

0.7

79.2

26.2

Minor 5ss

38.9

-1.2

3.4

57.5

46.7

Minor BPS

40.7

-0.6

2.4

57.23

45.5

Associated Gene:

Gene:

PKNOX2

Ensembl Gene ID:

ENSAPLG00000013813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014416

281705 - 304546

22842