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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2972857_3010965_R

Intron Information:

Intron Rank:
134715
Intron Class:
major
Intron Phase:
Intron Coordinates:
2972857 - 3010965
Intron Length:
38109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
CTGCTCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
85
0.79
0.7
77
31.7
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
41.5
-0.5
2
57.86
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019812
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032639
2966075 - 3011037
44963