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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_2976510_2976910_F

Intron Information:

Intron Rank:
134598
Intron Class:
major
Intron Phase:
Intron Coordinates:
2976510 - 2976910
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
GTGTTGTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
71.9
0.49
0.9
72.6
32.2
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
49.6
0.05
2.3
71.67
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022350
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035478
2975719 - 2977343
1625