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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3001019_3002896_R

Intron Information:

Intron Rank:
144895
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
3001019 - 3002896
Intron Length:
1878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTCAGGAGC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGAAAT
U12 Branch Point Sequence:
GCTGGCAGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.4
53.2
40.6
Major BPS
48.8
-0
1.2
54.6
37.8
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
30
-2.3
3.1
35.8
40.7
Minor BPS
39.8
-0.6
2.1
55.82
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025342
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018743
2999966 - 3003477
3512