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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_301678_303295_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
301678 - 303295
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAT
Flanking Amino Acid:
QGGNSGTNPDGSVGMDNLQP
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.1
36
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
79.2
38
Minor 5ss
32.7
-2
3.1
37.9
40.9
Minor BPS
74.5
0.85
1.2
85.98
33.4

Associated Gene:

Gene:
PKNOX2
Ensembl Gene ID:
ENSAPLG00000013813
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014416
281705 - 304546
22842