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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3059297_3059416_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3059297 - 3059416
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCCTTCTGACGG
Flanking Amino Acid:
SEFFAKDLSQDTWYEFRVLA
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
76.5
0.6
1
72.6
42.4
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
43.5
-0.6
2
46.74
46.5

Associated Gene:

Gene:
IGSF9B
Ensembl Gene ID:
ENSAPLG00000010409
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010849
3053687 - 3083452
29766