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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_307086_307858_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
307086 - 307858
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTCCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
ACGGCACTATTT
Flanking Amino Acid:
SVEDLQMLTNILFAMKEGNE
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
65.5
40.2
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
86.8
0.83
0.7
81.2
23.8
Minor 5ss
33.6
-1.9
3
48.4
41.1
Minor BPS
39.5
-0.7
2
51.7
43.2

Associated Gene:

Gene:
FEZ1
Ensembl Gene ID:
ENSAPLG00000017289
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025621
305878 - 318070
12193