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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3074731_3076126_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3074731 - 3076126
Intron Length:
1396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CTTCCCATAACC
Flanking Amino Acid:
AVHTTRLLVQGPPFIVSPPE
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.5
36.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
74.5
0.55
0.8
65.8
34.8
Minor 5ss
37.8
-1.4
3.3
51.1
45.6
Minor BPS
67.5
0.53
1.7
77.33
38.3

Associated Gene:

Gene:
IGSF9B
Ensembl Gene ID:
ENSAPLG00000010409
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010849
3053687 - 3083452
29766