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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3100036_3100255_R

Intron Information:

Intron Rank:
151697
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
3100036 - 3100255
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGGGTTTG
5'SS Class:
weak_major
3'SS Sequence:
TCTTGCTAATGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCTTGCTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.4
57
44.6
Major BPS
80
0.75
1
78.6
31
Major PPT
49.8
-0
1.7
63.3
42.1
Minor 5ss
38.8
-1.3
3.2
52.7
44.8
Minor BPS
46.5
-0.4
2.3
58.92
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029166
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019266
3098461 - 3102128
3668