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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3140882_3142855_R

Intron Information:

Intron Rank:
154583
Intron Class:
major
Intron Phase:
Intron Coordinates:
3140882 - 3142855
Intron Length:
1974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCTGTACT
5'SS Class:
major
3'SS Sequence:
TTCTGACTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTCTGACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.3
69.8
40.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
69.7
0.44
1
62.3
43.5
Minor 5ss
40
-1.1
2.5
49.7
40.4
Minor BPS
56.7
0.07
1.8
67.49
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030729
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048341
3138654 - 3142901
4248