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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3145402_3146316_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3145402 - 3146316
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTCCTTTATT
Flanking Amino Acid:
NTKPVVQEFQSVELSCIIKS
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
63
37.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
29.8
-2.3
3.1
32.5
35.7
Minor BPS
76.9
0.93
1.5
90.44
33

Associated Gene:

Gene:
JAM3
Ensembl Gene ID:
ENSAPLG00000018535
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027488
3145293 - 3154231
8939