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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3146431_3147291_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3146431 - 3147291
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGACGA
5'SS Class:
major
3'SS Sequence:
TCGTCTGTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTATCTTGAATT
Flanking Amino Acid:
SYVFFDNKMQGDFATRAEIL
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
55.2
43.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71
0.47
1
69.9
40.3
Minor 5ss
37
-1.5
3
39.2
46.1
Minor BPS
66.1
0.58
1.4
77.41
39.4

Associated Gene:

Gene:
JAM3
Ensembl Gene ID:
ENSAPLG00000018535
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027488
3145293 - 3154231
8939