Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3147445_3147675_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3147445 - 3147675

Intron Length:

231

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGCTG

5'SS Class:

major

3'SS Sequence:

GTGTCTCCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

TCAGCAGTAACA

Flanking Amino Acid:

DEINIQLTVQVKPVTPRCVV

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

58.9

45.4

Major BPS

77.7

0.69

83.3

27.7

Major PPT

76.7

0.6

0.9

70.1

36.4

Minor 5ss

40.5

-1.1

3.3

55.9

48.3

Minor BPS

46.5

-0.2

2.3

61.03

44.8

Associated Gene:

Gene:

JAM3

Ensembl Gene ID:

ENSAPLG00000018535

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027488

3145293 - 3154231

8939