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Intron Name: Anas_platyrhynchos_platyrhynchos_25_3148403_3149322_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3148403 - 3149322

Intron Length:

920

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTGAGTGGC

5'SS Class:

major

3'SS Sequence:

TCTCTCTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

TCTTTAAAAAAA

Flanking Amino Acid:

AKCEEQEMEVYDLNIGGIIG

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.7

0.44

1.1

39.4

Major BPS

73.1

0.58

79.6

29.1

Major PPT

85.6

0.8

0.6

84.6

23.1

Minor 5ss

30.5

-2.2

3.2

44.4

43.5

Minor BPS

42.8

-0.5

2.1

58.18

41.1

Associated Gene:

Gene:

JAM3

Ensembl Gene ID:

ENSAPLG00000018535

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027488

3145293 - 3154231

8939