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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3149453_3150695_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3149453 - 3150695
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTCCCTTTATT
Flanking Amino Acid:
YFANSKESGESYKTPAKPDG
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
78.5
0.64
0.8
77
30.1
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
73.8
0.83
1.5
89.88
33.9

Associated Gene:

Gene:
JAM3
Ensembl Gene ID:
ENSAPLG00000018535
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027488
3145293 - 3154231
8939