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Intron Name: Anas_platyrhynchos_platyrhynchos_25_3150751_3151356_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3150751 - 3151356

Intron Length:

606

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATAAAT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTACAA

U12 Branch Point Sequence:

ACAACCAGAACT

Flanking Amino Acid:

GVNYIRTDDEGDFRHKSSFV

Intron Amino Acid Position:

289

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

82.6

29.4

Major BPS

49.4

-0

1.1

58.6

36.6

Major PPT

82.8

0.74

0.9

77.1

37.1

Minor 5ss

35.2

-1.7

49.1

46.7

Minor BPS

49.2

0.02

1.8

66.59

43.1

Associated Gene:

Gene:

JAM3

Ensembl Gene ID:

ENSAPLG00000018535

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027488

3145293 - 3154231

8939